| Manufactor Serial Number | Type | Serial / Registration Number | Owner | Fate |
| 500-803 | Aero Design 500 Commander | ES-ACA | Civil Owner | |
| 227 | Dassault Falcon 2000 | ES-CKH | Civil Owner | |
| 2157 | Airbus A-320-232 | ES-LAA | Civil Owner | Reregistered |
| 2303 | Airbus A-321-231 | ES-MAG | Civil Owner | |
| 2480 | Airbus A-321-231 | ES-MLS | Civil Owner | Reregistered |
| 81181 | Cessna 172 | ES-PCO | Estonia Government | |
| 5094 | Enstrom 480B | ES-PEG | Estonia Government | |
| 810726 | Aero L-410UVP-T Turbolet | ES-PLW | Estonia Government | |
| 810727 | Aero L-410UVP-T Turbolet | ES-PLY | Estonia Government | |
| 10532 | Mil Mi-8S ''Hip C'' | ES-PMA | Estonia Government | Tartu Estonia |
| 10588 | Mil Mi-8TB ''Hip E'' | ES-PMB | Estonia Government | |
| 10579 | Mil Mi-8TB ''Hip E'' | ES-PMC | Estonia Government | Muraste Estonia |
| 10595 | Mil Mi-8T "Hip C" | ES-PMD | Estonia Government | Valga Estonia |
| S-1774 | Hughes (Schweizer) 269C | ES-PSF | Estonia Government | |
| 31069 | AgustaWestland AW-139 | ES-PWA | Estonia Government | |
| 31144 | AgustaWestland AW-139 | ES-PWB | Estonia Government | |
| 31333 | AgustaWestland AW-139 | ES-PWC | Estonia Government | |
| 888 | Airbus A-320-214 | ES-SAK | Civil Owner | Reregistered |
| 566 | Airbus A-320-214 | ES-SAL | Civil Owner | Reregistered |
| 1896 | Airbus A-320-232 | ES-SAM | Civil Owner | |
| 1213 | Airbus A-320-214 | ES-SAN | Civil Owner | |
| 936 | Airbus A-320-214 | ES-SAO | Civil Owner | Reregistered |
| 1183 | Airbus A-320-232 | ES-SAP | Civil Owner | |
| 984 | Airbus A-320-214 | ES-SAQ | Civil Owner | |
| 1725 | Airbus A-320-214 | ES-SAS | Civil Owner | Reregistered |
| 1578 | Airbus A-320-214 | ES-SAT | Civil Owner | Reregistered |
| 1657 | Airbus A-320-214 | ES-SAU | Civil Owner | Reregistered |
| 2123 | Airbus A-320-214 | ES-SAV | Civil Owner | Reregistered |
| 1663 | Airbus A-320-232 | ES-SAW | Civil Owner | Reregistered |
| 1663 | Airbus A-320-232 | ES-SAW | Civil Owner | |
| 3308 | Airbus A-320-232 | ES-SAZ | Civil Owner | |
| 264 | Dassault Falcon 900LX | ES-SLS | Civil Owner | |
| 223 | Dassault Falcon 2000 | ES-SNK | Civil Owner | |
| 707 | Dassault Falcon 2000S | ES-TEP | Civil Owner | Reregistered |
| 547845102 | Mil (PZL) Mi-2 "Hoplite" | ES-XAB | Estonia Government | |
| 549035015 | Mil (PZL) Mi-2 "Hoplite" | ES-XAC | Estonia Government | |
| 549133035 | Mil (PZL) Mi-2 "Hoplite" | ES-XAD | Estonia Government | |
| 1413 | Airbus A-320-214 | ES-ZGI | Civil Owner | |